Workshop2026

DATE	DAY	TIME	PRESENTER	TOPIC
12 Jan	Mon	8:30a-9:30a	Chenhong Li	Phylogenomcis & EvolMarkers
		9:45a-10:30a	Jinhang Zhang	Linux Server usage
		10:45a-11:30a	Jinhang Zhang	Doker usage & class practice
		1:30p-2:15p	Jingrou Sun	Data preparation of NGS raw reads
		2:30p-3:15p	Jingrou Sun	Data assembly(4434 loci & mitochondrial)Geneious
		3:30p-4:15p	Yangkai Shao Jiantao Hu	Tree construction(concatnated tree & species tree)RAXML & ASTRAL
13 Jan	Tue	8:30a-9:30a	Shanshuo Zhang	SNP calling and filtraionGATK4 & Vcftools
		9:45a-10:30a	Shanshuo Zhang	Population structurePCA STRUCTURE ADMIXTURE
		10:45a-11:30a	Jiantao Hu	Popuation demographyPLINK MSMC FSC
		1:30p-2:15p	Li Wang	eDNA analysis pipeline
		2:30p-3:15p	Xinru Li Yiwen Zhang	DADA2/UNOISE Assembling ASV to OTU
		3:30p-4:15p	Yan Mai Yang Su	Database clean EDNA analysis isualized software
14 Jan	Wed	8:30a-9:30a	Lixian Wu Jiantao Hu	Node dating r8S & BEAST2
		9:45a-10:30a	Jiantao Hu	Reconstruct ancestral stateRASP & BioGeoBears
		10:45a-11:30a	Yi Qing Fam	Phylogenetic networksPhylonetworks & Dsuite
		1:30p-2:15p	Jiantao Hu	Intra-population geneflowsTreemix
		2:30p-3:15p	Jiantao Hu	Caleulation of Speciationrateape & Phytools
		3:30p-4:15p	Tiangin Wu	Assemble T2T Genome(hifiasm,3D-DNA)
15 Jan	Thur	8:30a-9:30a	Lang Lu	Comparative genomics
		9:45a-10:30a	Dipak	Annotation and QC forgenome assembly
		10:45a-11:30a	Kishor	Gene family (CAFE) Positive selection (PAML)
		1:30p-2:15p	Kishor	DE analysis: Model species(HisattStringTie)
		2:30p-3:15p	Kishor YuXuan	DE analysis: Non-Modelspecies (Trinity)
		3:30p-4:15p	Ruyi Huang	Fst,Fdist,Genome-widestatistics scan (Stack)
16 Jan	Fri	8:30a-9:30a	Jinghang Zhang	Single cell to Spatialtranscriptomics
		9:45a-10:30a	Dipak	Stuctural Variation
		10:45a-11:30a	Liang Lu	Sweep selection(SweeD)

Workshop2026

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